אודות
פרסומים
- Simultaneous separation in bounded degree trees, Snir, S. & Yuster, R., 15 Jul 2026, In: Discrete Applied Mathematics. 387, p. 160-171 12 p.
- A graph homomorphism approach for unraveling histories of metastatic cancers and viral outbreaks under evolutionary constraints, Kuzmin, K., Schmidt, H., Kafi Kang, M., Snir, S., Raphael, B. J. & Skums, P., Dec 2025, In: Nature Communications. 16, 1, 8027.
- The mammalian longevity associated acetylome, Feldman-Trabelsi, S., Touitou, N., Nagar, R., Schwartz, Z., Michelson, A., Shaki, S., Avivi, M. Y., Lerrer, B., Snir, S. & Cohen, H. Y., Dec 2025, In: Nature Communications. 16, 1, 3749.
- Evolution of gene order in prokaryotes is driven primarily by gene gain and loss, Brezner, S., Garushyants, S. K., Wolf, Y. I., Koonin, E. V. & Snir, S., 17 Jun 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 24, e2502752122.
- The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation, Farrell, C., Tandon, K., Ferrari, R., Lapborisuth, K., Modi, R., Snir, S. & Pellegrini, M., Apr 2025, In: GeroScience. 47, 2, p. 2439-2454 16 p.
- Untying Rates of Gene Gain and Loss Leads to a New Phylogenetic Approach, Dvir, Y. & Snir, S., 2025, Research in Computational Molecular Biology - 29th International Conference, RECOMB 2025, Proceedings. Sankararaman, S. (ed.). Springer Science and Business Media Deutschland GmbH, p. 414-419 6 p. (Lecture Notes in Computer Science; vol. 15647 LNBI).
- Privacy-preserving biological age prediction over federated human methylation data using fully homomorphic encryption, Goldenberg, M., Mualem, L., Shahar, A., Snir, S. & Akavia, A., Sep 2024, In: Genome Research. 34, 9, p. 1324-1333 10 p.
- Enforcing Temporal Consistency in Migration History Inference, Roddur, M. S., Snir, S. & El-Kebir, M., May 2024, In: Journal of Computational Biology.
- Exponential dynamics of DNA methylation with age, Dufek, G., Katriel, G., Snir, S. & Pellegrini, M., 21 Feb 2024, In: Journal of Theoretical Biology. 579, 111697.
- Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved Efficiency, Goldenberg, M., Mualem, L., Shahar, A., Snir, S. & Akavia, A., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 412-416 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).
- On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics, Snir, S., Wolf, Y., Brezner, S., Koonin, E. & Steel, M., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 173-188 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).
- Gene-Adjacency-Based Phylogenetics Under a Stochastic Gain-Loss Model, Dvir, Y., Brezner, S. & Snir, S., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 69-85 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).
- Gene Transfer‑Based Phylogenetics: Analytical Expressions and Additivity via Birth–Death Theory, Katriel, G., Mahanaymi, U., Brezner, S., Kezel, N., Koutschan, C., Zeilberger, D., Steel, M. & Snir, S., 1 Nov 2023, In: Systematic Biology. 72, 6, p. 1403-1417 15 p.
- Inferring Temporally Consistent Migration Histories, Roddur, M. S., Snir, S. & El-Kebir, M., Aug 2023, 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023. Belazzougui, D. & Ouangraoua, A. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 273).
- Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics - Extended Abstract, Katriel, G., Mahanaymi, U., Koutschan, C., Zeilberger, D., Steel, M. & Snir, S., 2023, Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Guo, X., Mangul, S., Patterson, M. & Zelikovsky, A. (eds.). Springer Science and Business Media Deutschland GmbH, p. 120-135 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14248 LNBI).
- Identifying epigenetic aging moderators using the epigenetic pacemaker, Farrell, C., Hu, C., Lapborisuth, K., Pu, K., Snir, S. & Pellegrini, M., 2023, In: Frontiers in Bioinformatics. 3, 1308680.
- Hibernation slows epigenetic ageing in yellow-bellied marmots, Pinho, G. M., Martin, J. G. A., Farrell, C., Haghani, A., Zoller, J. A., Zhang, J., Snir, S., Pellegrini, M., Wayne, R. K., Blumstein, D. T. & Horvath, S., Apr 2022, In: Nature Ecology and Evolution. 6, 4, p. 418-426 9 p.
- Private Epigenetic PaceMaker Detector Using Homomorphic Encryption - Extended Abstract, Goldenberg, M., Snir, S. & Akavia, A., 2022, Bioinformatics Research and Applications - 18th International Symposium, ISBRA 2022, Proceedings. Bansal, M. S., Cai, Z. & Mangul, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 52-61 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13760 LNBI).
- The effects of age, sex, weight, and breed on canid methylomes, Rubbi, L., Zhang, H., Feng, J., He, C., Kurnia, P., Ratan, P., Tammana, A., House, S., Thompson, M., Farrell, C., Snir, S., Stahler, D., Ostrander, E. A., vonHoldt, B. M. & Pellegrini, M., 2022, In: Epigenetics. 17, 11, p. 1497-1512 16 p.
- On the quartet distance given partial information, Snir, S., Weissberg, O. & Yuster, R., 2021, In: Journal of Graph Theory. 100, 2, p. 252-269 18 p.
- A New Phylogenomic Approach For Quantifying Horizontal Gene Transfer Trends in Prokaryotes, Avni, E. & Snir, S., 1 Dec 2020, In: Scientific Reports. 10, 1, 12425.
- Horizontal Gene Transfer Phylogenetics: A Random Walk Approach, Sevillya, G., Doerr, D., Lerner, Y., Stoye, J., Steel, M., Snir, S. & Thorne, J., 1 May 2020, In: Molecular Biology and Evolution. 37, 5, p. 1470-1479 10 p.
- Epigenetic pacemaker: Closed form algebraic solutions, Snir, S., 16 Apr 2020, In: BMC Genomics. 21, 257.
- Detecting horizontal gene transfer: A probabilistic approach, Sevillya, G., Adato, O. & Snir, S., 5 Mar 2020, In: BMC Genomics. 21, 106.
- ‘Multi-SpaM’: A maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees, Dencker, T., Leimeister, C. A., Gerth, M., Bleidorn, C., Snir, S. & Morgenstern, B., 1 Mar 2020, In: NAR Genomics and Bioinformatics. 2, 1, lqz013.
- Inference of Mutability Landscapes of Tumors from Single Cell Sequencing Data, Tsyvina, V., Zelikovsky, A., Snir, S. & Skums, P., 2020.
- Human epigenetic ageing is logarithmic with time across the entire lifespan, Snir, S., Farrell, C. & Pellegrini, M., 2 Sep 2019, In: Epigenetics. 14, 9, p. 912-926 15 p.
- Epigenetic PaceMaker: Closed Form Algebraic Solutions, Snir, S., 2019, RECOMB - Comparative Genomics 2019.
- A phylogenomic study quantifies competing mechanisms for pseudogenization in prokaryotes-The Mycobacterium leprae case, Avni, E., Montoya, D., Lopez, D., Modlin, R., Pellegrini, M. & Snir, S., Nov 2018, In: PLOS ONE. 13, 11, e0204322.
- The Performance of Two Supertree Schemes Compared Using Synthetic and Real Data Quartet Input, Avni, E., Yona, Z., Cohen, R. & Snir, S., 1 Feb 2018, In: Journal of Molecular Evolution. 86, 2, p. 150-165 16 p.
- Detecting Horizontal Gene Transfer: A Probabilistic Approach, Sevillya, G., Adato, O. & Snir, S., 2018, ISBRA 2018. (Lecture Notes in Bioinformatics; vol. 10847).
- Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes, Duong, D., Gai, L., Snir, S., Kang, E. Y., Han, B., Sul, J. H. & Eskin, E., 2017, Proceedings of ISMB 2017.
- Reconstruction of Real and Simulated Phylogenies Based on Quartet Plurality Inference, Avni, E. & Snir, S., 2017, ISBRA 2017. (Lecture Notes in Bioinformatics; vol. 10330).
- Triplet MaxCut: a new toolkit for rooted supertree, Sevillya, G., Frenkel, Z. & Snir, S., 1 Nov 2016, In: Methods in Ecology and Evolution. 7, 11, p. 1359-1365 7 p.
- Weighted quartets phylogenetics, Avni, E., Cohen, R. & Snir, S., Mar 2015, In: Systematic Biology. 64, 2, p. 233-242 10 p.
- On the number of genomic pacemakers: A geometric approach, Snir, S., 31 Dec 2014, In: Algorithms for Molecular Biology. 9, 26, 26.
- Universal pacemaker of genome evolution in animals and fungi and variation of evolutionary rates in diverse organisms, Snir, S., Wolf, Y. I. & Koonin, E. V., Jun 2014, In: Genome Biology and Evolution. 6, 6, p. 1268-1278 11 p.
- Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges, Gronau, I., Moran, S. & Snir, S., May 2012, In: Random Structures and Algorithms. 40, 3, p. 350-384 35 p.
- Quartet MaxCut: A fast algorithm for amalgamating quartet trees, Snir, S. & Rao, S., Jan 2012, In: Molecular Phylogenetics and Evolution. 62, 1, p. 1-8 8 p.
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems, Makarova, K. S., Wolf, Y. I., Snir, S. & Koonin, E. V., Nov 2011, In: Journal of Bacteriology. 193, 21, p. 6039-6056 18 p.
- Tracing the most parsimonious indel history, Snir, S. & Pachter, L., 1 Aug 2011, In: Journal of Computational Biology. 18, 8, p. 967-986 20 p.
- Molecular variation in triturus vittatus vittatus (Urodela) from breeding sites near the southern extremity of its distribution revealed by DNA sequencing of mitochondrial cytochrome b gene and control region, Pearlson, O., Blaustein, L., Snir, S., Goldberg, D. & Degani, G., Jun 2010, In: Current Herpetology. 29, 1, p. 11-22 12 p.
- Analytic solutions of maximum likelihood on forks of four taxa, Chor, B. & Snir, S., Aug 2007, In: Mathematical Biosciences. 208, 2, p. 347-358 12 p.
- Efficient parsimony-based methods for phylogenetic network reconstruction, Jin, G., Nakhleh, L., Snir, S. & Tuller, T., 2007, In: Bioinformatics. 23, 2, p. e123-e128
- Maximum likelihood molecular clock comb: Analytic solutions, Chor, B., Khetan, A. & Snir, S., Apr 2006, In: Journal of Computational Biology. 13, 3, p. 819-837 19 p.
- Phylogenetic profiling of insertions and deletions in vertebrate genomes, Snir, S. & Pachter, L., 2006, Research in Computational Molecular Biology - 10th Annual International Conference, RECOMB 2006, Proceedings. p. 265-280 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3909 LNBI).
- Efficient approximation of convex recolorings, Moran, S. & Snir, S., 2005, In: Lecture Notes in Computer Science. 3624, p. 192-208 17 p.
- Using semi-definite programming to enhance supertree resolvability, Moran, S., Rao, S. & Snir, S., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 89-103 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3692 LNBI).
- Maximum likelihood on four taxa phylogenetic trees: Analytic solutions, Chor, B., Khetan, A. & Snir, S., 2003, p. 76-83. 8 p.
- Simple and efficient network decomposition and synchronization, Moran, S. & Snir, S., 28 Jul 2000, In: Theoretical Computer Science. 243, 1-2, p. 217-241 25 p.
